Lecture Topics (chapter)

 Relevant Links

Week 1
1/10 – 1/14

Introduction, Background Review, Water (1,2)

 NCBI HomePage

Week 2
1/17 – 1/21

Amino acids, Protein Structure (3,4)
Quiz 1 (1/21)

Solutions to problems-1
Solutions to problems-2
Solutions to problems-3
Solutions to problems-4
Solutions to problems-5
old quiz #1
Protein Explorer FrontDoor
Index of klothopdb - small molecule pdb's
RCSB Protein Data Bank

Week 3
1/24 – 1/28

Protein Function (5)
Exam 1 (1/28)

Chapter 3 solutions-1
Chapter 3 solutions-2
Chapter 4 solutions
Biochemical Nomenclature Committees
Old Exam 1
Snowden Library Periodicals List
Document Delivery

Potential Proteins for Integrated Informatics Projects

• hexokinase - Stamatis Zeris

• phosphoglucose isomerase

• phosphofructokinase - Laura Lockard

• fructose-1,6 bisphosphate aldolase - Claire Ecker

• triose phosphate isomerase - Erin Peters

• glyceraldehyde-3-phosphate dehydrogenase

• phosphoglycerate kinase - Elizabeth Sehi

• phosphoglycerate mutase - Theresa LaBarte

• bisphosphoglycerate mutase

• enolase - Mary Gantz

• pyruvate kinase - Erin Horsley

• pyruvate dehydrogenase - Matt Bruce

• citrate synthase - Stephanie Falcioni

• aconitase

• isocitrate dehydrogenase

• succinyl-CoA synthetase

• succinate dehydrogenase

• fumarase - Kim McDowell

• mitochondrial malate dehydrogenase - Andrea Santini

• cytoplasmic malate dehydrogenase

• fructose 1,6 bisphosphatase

• PEP carboxykinase - Katie Koury

• phosphoglucomutase - Lindsey Welch

• glycogen phosphorylase - Dylan Dupuis

• phosphorylase kinase - Damien Reali

• glycogen synthase - Lisa Stutzman

• glycogen synthase kinase - Olivia English

• glucose-6-phosphate dehydrogenase - Elizabeth Hartman

• Transketolase - Christine Caroselli

• adenosine deaminase - Erin Karschner

• FGAR Amidotransferase - Erica Walsh

• B-raf - Lauren Salmon

Week 4
1/31 – 2/4

Mass Spec, Enzymes (6)

• solutions to ch3 mass spec problems

• solutions to ch6 problems-1

• solutions to ch6 problems-2

Week 5
2/7 – 2/11

Bioenergetics (13), Enzyme mechanisms
Quiz 2 (2/11)

• solutions to ch13 problems-1

• solutions to ch13 problems-2

• solutions to ch13 problems-3

• solutions to ch13 problems-4

• solutions to ch13 problems-5

• solutions to ch13 problems-6

Week 6
2/14 – 2/18

Lipids & Membranes (10, 11)
IIP bibliography due (2/18)

Week 7
2/21 – 2/25

Signal Transduction (12)
Exam 2 (2/24)

old exam 2
Proc.Nat'l Acad.Sci.USA current issue
NEJM current issue
J. Bacteriol current issue

Week 8
3/7 – 3/11

Carbohydrates (7)
IIP Sequence Analysis and Structure Views due (3/11)

 ExPASy - Biochemical Pathways

solutions to ch7 problems-1
solutions to ch7 problems-2
solutions to ch7 problems-3
solutions to ch7 problems-4
 

Week 9
3/14 – 3/18

 Carbohydrate metabolism and regulation (14,15)
Phosphatase Lab report due (3/18)

Week 10
3/21 – 3/25

TCA cycle, Respiration (16,19)
Quiz 3 (3/25)

solutions to Ch 14-16 problems

Week 11
3/28 – 4/1

Lipid Metabolism  (17, 21) Exam 3 (4/1)

old exam 3 
solutions for problem set

Week 12
4/4 – 4/8

Lipid Synthesis, Amino Acid Catab. (18, 22)  IIP Analytical Text due (4/8)

Week 13
4/11 – 4/15

Nitrogen Anabolism, (22)
Lipid Analysis Lab report due (4/15)

Week 14
4/18 – 4/22

Integration of Metabolism (23)

 old exam 4