Lecture Topics (chapter)

 Relevant Links

Week 1
1/9 – 1/13

Introduction, Background. Water (1-JN, 2-CM)

 NCBI HomePage
chapter 2 homework-1
chapter 2 homework-2
chapter 2 homework-3
chapter 2 homework-4
chapter 2 homework-5

Week 2
1/16 – 1/20

Amino acids,  (3-CM,)
Quiz 1 (1/20)

old quiz #1
chapter 3 homework-1
chapter 3 homework-2
chapter 3 homework-3
chapter 3 homework-4
Protein Explorer FrontDoor
Index of klothopdb - small molecule pdb's
RCSB Protein Data Bank

Week 3
1/23 – 1/27

Protein Structure (4-JN)
Exam 1 (1/27)

Biochemical Nomenclature Committees
Old Exam 1
Snowden Library Periodicals List
Document Delivery
Chapter 4 homework

Proteins for Integrated Informatics Projects

• GLUTATHIONE TRANSFERASE - 1EEM - Josie Castillo

• SQUALENE SYNTHASE - 1EZF - Amanda Smolarek

• 3-HYDROXYACYL-COA DEHYDROGENASE - 1F17 - Anne DiSante

• 17-BETA-HYDROXYSTEROID-DEHYDROGENASE - 1FDT - Stephanie Ross

• MONOAMINE OXIDASE B - 1GOS - Kyle Hopkins

• BILIVERDIN IX BETA REDUCTASE - 1HE2 - Lauren Watkins

• NITRIC OXIDE SYNTHASE - 1M9Q - Betsy Reese

• PYRUVATE DEHYDROGENASE - 1NI4 - Jamie Tribo

• DNA TOPOISOMERASE I - 1A31 - Adam Brown

Week 4
1/30 – 2/3

Protein Function (5-JN)
IIP bibliography due (2/3)

Week 5
2/6 – 2/10

Enzymes , Mechanisms (6-JN,CM)

Week 6
2/13 – 2/17

Lipids & Membranes (10-CM, 11-JN)

Exam 2 (2/17)

chapter 10 homework-1
chapter 10 homework-2
chapter 10 homework-3
 

Week 7
2/20 – 2/24

Membrane Transport (11-JN) Signal Transduction (12-JN)
IIP Sequence Analysis and Structure Views due (2/24)

old exam 2

Week 8
3/6 – 3/10

Bioenergetics (13-CM) Carbohydrates (7-CM) Lipid Analysis Lab report due (3/10)

Chapter 7 homework-1
Chapter 7 homework-2
Chapter 7 homework-3
Chapter 7 homework-4
Chapter 13 homework-1
Chapter 13 homework-2
Chapter 13 homework-3
Chapter 13 homework-4
Chapter 13 homework-5
Chapter 13 homework-6

Week 9
3/13 – 3/17

Carbohydrates (7 CM) and their  Metabolism (14-JN) Quiz 2 (3/17)

  ExPASy - Biochemical Pathways
Chapter 14 problems

Week 10
3/20 – 3/24

Regulation of Carbohydrate Metabolism (15-JN)
Exam 3 (3/24)

SDS-PAGE gel-1
SDS-PAGE gel-2
Western Blot membrane-1
Western Blot membrane-2

Week 11
3/27 – 3/31

Citric Acid Cycle (16-JN)
Electron Transport (19-JN)
Western Blot Lab report due (3/31)

old exam 3 
 

Week 12
4/3 – 4/7

Lipid Catabolism  (17-CM)
Lipid Synthesis (21-JN) IIP Analytical Text due (4/7)

Chapter 17 homework-1
Chapter 17 homework-2
Chapter 17 homework-3
Chapter 17 homework-4

Week 13
4/10 – 4/14

Amino Acid Catabolism. (18-JN, 22-JN)
Nitrogen Metabolism

Week 14
4/17 – 4/21

Integration of Metabolism (23-JN)

 old exam 4